miRBase entry: csi-MIR169e

Stem-loop csi-MIR169e


Accession
MI0039640
Description
Citrus sinensis csi-MIR169e precursor miRNA

Literature search
5 open access papers mention csi-MIR169e
(12 sentences)

Sequence

gucuuacaugaauauaauaucauuguuuguUAGCCAAGGAUGACUUGCCUgcaccuugauugcaagacgaggguuucaaguggcuggaagccucucuuguuugguugcCAGGCAGUCUCCUUGGCUAAGucacaggcucuuaucuuucaugcuaggccu
((((..((((((.((((.....((((...(((((((((((.((((.(((((((((......((((((.((((.(((((......))))).))))))))))..)).)).))))))))))))))))))))...))))....))))..))))))..))))..

Structure
--    ua      -u    uauca    uug           U    U     -  -  uugauu      c    g     ag 
  gucu  caugaa  auaa     uugu   uUAGCCAAGGA GACU GCCUg ca cc      gcaaga gagg uuuca  u
  ||||  ||||||  ||||     ||||   ||||||||||| |||| ||||| || ||      |||||| |||| |||||   
  cgga  guacuu  uauu     gaca   AAUCGGUUCCU CUGA CGGAC gu gg      uguucu cucc aaggu  g
uc    uc      uc    -cucg    cuG           -    -     c  u  ----uu      -    g     cg 


Annotation confidence Not enough data
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Genome context
chr2: 11051619-11051777 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from csi-MIR169e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature csi-miR169e-5p

Accession MIMAT0048893
Description Citrus sinensis csi-miR169e-5p mature miRNA
Sequence 31 - UAGCCAAGGAUGACUUGCCU - 50
Evidence experimental
Illumina [1]

Mature csi-miR169e-3p

Accession MIMAT0048894
Description Citrus sinensis csi-miR169e-3p mature miRNA
Sequence 109 - CAGGCAGUCUCCUUGGCUAAG - 129
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 28054378
    MicroRNA annotation of plant genomes - Do it right or not at all
    "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
    Bioessays (2017) 39:1600113