miRNA Entry for MI0039640

Stem-loop sequence csi-MIR169e

Accession

MI0039640 (change log)

Description

Citrus sinensis miR169e stem-loop

Literature search

5 open access papers mention csi-MIR169e
(12 sentences)

Stem-loop

   --    ua      -u    uauca    uug           u    u     -  -  uugauu      c    g     ag 
5'   gucu  caugaa  auaa     uugu   uuagccaagga gacu gccug ca cc      gcaaga gagg uuuca  u
     ||||  ||||||  ||||     ||||   ||||||||||| |||| ||||| || ||      |||||| |||| |||||   
3'   cgga  guacuu  uauu     gaca   aaucgguuccu cuga cggac gu gg      uguucu cucc aaggu  g
   uc    uc      uc    -cucg    cug           -    -     c  u  ----uu      -    g     cg

Get sequence

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

Coordinates (Csi_valencia_1.0; GCA_000317415.1)	Overlapping transcripts
chr2: 11051619-11051777 [+]	intergenic

Clustered miRNAs

< 10kb from csi-MIR169e
csi-MIR169i	chr2: 11046938-11047093 [+]
csi-MIR169d	chr2: 11047192-11047344 [+]
csi-MIR169e	chr2: 11051619-11051777 [+]

Database links

miRBase Tracker:MI0039640

Mature sequence csi-miR169e-5p
Accession	MIMAT0048893
Sequence	31 - uagccaaggaugacuugccu - 50 Get sequence
Evidence	experimental; Illumina [1]

Mature sequence csi-miR169e-3p
Accession	MIMAT0048894
Sequence	109 - caggcagucuccuuggcuaag - 129 Get sequence
Evidence	experimental; Illumina [1]

References
1	PMID:28054378 "MicroRNA annotation of plant genomes - Do it right or not at all" Taylor RS, Tarver JE, Foroozani A, Donoghue PC Bioessays. [Epub prior to print](2017).

miRBase

Stem-loop sequence csi-MIR169e

Mature sequence csi-miR169e-5p

Mature sequence csi-miR169e-3p

References