miRNA Entry for MI0039639

Stem-loop sequence csi-MIR169d

Accession

MI0039639 (change log)

Description

Citrus sinensis miR169d stem-loop

Literature search

5 open access papers mention csi-MIR169d
(12 sentences)

Stem-loop

   -gucuu       -  u    -  aa  uuug           u    u     -     -u    uauaauu        a 
5'       gcaugaa ga aaga gu  uu    uuagccaagga gacu gccug cggcu  gcaa       agguuuca g
         ||||||| || |||| ||  ||    ||||||||||| |||| ||||| |||||  ||||       |||||||| c
3'       cguacuu cu uucu cg  ag    aaucgguuccu cuga cggac guugg  uguu       uccgaagu u
   ccaaau       u  c    u  ac  -ucg           -    -     c     uu    ------u        u

Get sequence

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

Coordinates (Csi_valencia_1.0; GCA_000317415.1)	Overlapping transcripts
chr2: 11047192-11047344 [+]	intergenic

Clustered miRNAs

< 10kb from csi-MIR169d
csi-MIR169i	chr2: 11046938-11047093 [+]
csi-MIR169d	chr2: 11047192-11047344 [+]
csi-MIR169e	chr2: 11051619-11051777 [+]

Database links

miRBase Tracker:MI0039639

Mature sequence csi-miR169d-5p
Accession	MIMAT0048891
Sequence	31 - uagccaaggaugacuugccu - 50 Get sequence
Evidence	experimental; Illumina [1]

Mature sequence csi-miR169d-3p
Accession	MIMAT0048892
Sequence	103 - caggcagucuccuuggcuaag - 123 Get sequence
Evidence	experimental; Illumina [1]

References
1	PMID:28054378 "MicroRNA annotation of plant genomes - Do it right or not at all" Taylor RS, Tarver JE, Foroozani A, Donoghue PC Bioessays. [Epub prior to print](2017).

miRBase

Stem-loop sequence csi-MIR169d

Mature sequence csi-miR169d-5p

Mature sequence csi-miR169d-3p

References