miRBase entry: csi-MIR169b

Stem-loop csi-MIR169b


Accession
MI0039637
Description
Citrus sinensis csi-MIR169b precursor miRNA

Literature search
5 open access papers mention csi-MIR169b
(12 sentences)

Sequence

ucucguuuugUAGCCAAGGAUGACUUGCCUggagccccucaacgguauucuuacuuauuuaucauuucucaaaauauacgaguuaauuaacauaaaaucagaucacgaaguagaguagugcuuacauucuacuucaagaaaaugaaaggacuguaguaucuuugagugguuugcaggccaucuccuuggcuagcaagauggcu
..((((((((((((((((((.((...((((((((((.(((((.(((((...(((...(((.(((((((((.........)))........................((((((((((.((....))))))))))))....)))))).)))...)))))))).))))).))))).)))))..))))))))))).)))))))))..

Structure
uc         -         U  CUU     -     c     c     ucu   uua   a      cucaaaauauacgaguuaauuaacauaaaaucagaucac          a  g 
  ucguuuugU AGCCAAGGA GA   GCCUg gagcc cucaa gguau   uac   uuu ucauuu                                       gaaguagagu gu c
  ||||||||| ||||||||| ||   ||||| ||||| ||||| |||||   |||   ||| ||||||                                       |||||||||| ||  
  gguagaacg ucgguuccu cu   cggac uuugg gaguu cuaug   aug   gga aguaaa                                       cuucaucuua ca u
uc         a         -  -ac     g     u     u     ---   uca   a      -----------------------------------agaa          -  u 


Annotation confidence Not enough data
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Genome context
chr7: 1152858-1153060 [-]

Database links

Mature csi-miR169b-5p

Accession MIMAT0048888
Description Citrus sinensis csi-miR169b-5p mature miRNA
Sequence 11 - UAGCCAAGGAUGACUUGCCU - 30
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 28054378
    MicroRNA annotation of plant genomes - Do it right or not at all
    "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
    Bioessays (2017) 39:1600113