Stem-loop sequence csi-MIR166i

Accession

MI0039632 (change log)

Description

Citrus sinensis miR166i stem-loop

Literature search

7 open access papers mention csi-MIR166i
(12 sentences)

Stem-loop

   a     ----  a      uu     ac      -uc  gg   aaga   a 
5'  aguug    ag ggaaug  gucug  ucaaga   au  agg    aua a
    |||||    || ||||||  |||||  ||||||   ||  |||    |||  
3'  ucaac    uc ccuuac  cggac  gguucu   ua  ucc    uau u
   -     caaa  a      uu     ca      uau  aa   cgag   a 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Csi_valencia_1.0; GCA_000317415.1): JH999128.1: 611296-611395 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from csi-MIR166i

• csi-MIR166h: JH999128.1: 611054-611179 [+]
• csi-MIR166i: JH999128.1: 611296-611395 [+]

Database links

• miRBase Tracker:MI0039632

Mature sequence csi-miR166i-3p

• Accession: MIMAT0048881
• Sequence: 68 - ucuuggaccaggcuucauucc - 88
• Evidence: experimental; Illumina [1]

References

1. PMID:28054378 "MicroRNA annotation of plant genomes - Do it right or not at all" Taylor RS, Tarver JE, Foroozani A, Donoghue PC Bioessays. [Epub prior to print](2017).