miRBase entry: csi-MIR166f

Stem-loop csi-MIR166f


Accession
MI0039629
Description
Citrus sinensis csi-MIR166f precursor miRNA

Literature search
7 open access papers mention csi-MIR166f
(12 sentences)

Sequence

auggauggggaaaaaugauuguuucugaggGGACUGUUGUCUGGCUCGAUGcauuaauaauaauuauaauuauauaauuauaauuauaaugaaaaaaggguaUCGGACCAGGCUUCAUUCCCUucagaaucaaauucauuauuugaucuuuuu
..((((.(((...((((((((.(((((((((((.((..((((((.(((((((..........((((((((((((....)))))))))))).........))))))).))))))..)).))))))))))).)))..))))).))).))))....

Structure
--au    g   aaa     --   u           C  UU      C       auuaauaaua            u 
    ggau ggg   aauga  uug uucugaggGGA UG  GUCUGG UCGAUGc          auuauaauuaua a
    |||| |||   |||||  ||| ||||||||||| ||  |||||| |||||||          ||||||||||||  
    ucua uuu   uuacu  aac aagacuUCCCU AC  CGGACC GGCUaug          uaauauuaauau a
uuuu    g   --a     ua   u           U  UU      A       -ggaaaaaag            u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr3: 4882188-4882340 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from csi-MIR166f
Name Accession Chromosome Start End Strand Confidence




Database links

Mature csi-miR166f-5p

Accession MIMAT0048876
Description Citrus sinensis csi-miR166f-5p mature miRNA
Sequence 31 - GGACUGUUGUCUGGCUCGAUG - 51
Evidence experimental
Illumina [1]

Mature csi-miR166f-3p

Accession MIMAT0048877
Description Citrus sinensis csi-miR166f-3p mature miRNA
Sequence 103 - UCGGACCAGGCUUCAUUCCCU - 123
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 28054378
    MicroRNA annotation of plant genomes - Do it right or not at all
    "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
    Bioessays (2017) 39:1600113