Stem-loop sequence csi-MIR166f

Accession

MI0039629 (change log)

Description

Citrus sinensis miR166f stem-loop

Literature search

7 open access papers mention csi-MIR166f
(12 sentences)

Stem-loop

   --au    g   aaa     --   u           c  uu      cu      auuaauaaua            u 
5'     ggau ggg   aauga  uug uucugagggga ug  gucugg  cgaugc          auuauaauuaua a
       |||| |||   |||||  ||| ||||||||||| ||  ||||||  ||||||          ||||||||||||  
3'     ucua uuu   uuacu  aac aagacuucccu ac  cggacc  gcuaug          uaauauuaauau a
   uuuu    g   --a     ua   u           u  uu      ag      -ggaaaaaag            u 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Csi_valencia_1.0; GCA_000317415.1): chr3: 4882188-4882340 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from csi-MIR166f

• csi-MIR166f: chr3: 4882188-4882340 [+]
• csi-MIR166b: chr3: 4882349-4882498 [+]

Database links

• miRBase Tracker:MI0039629

Mature sequence csi-miR166f-5p

• Accession: MIMAT0048876
• Sequence: 31 - ggacuguugucuggcucgaug - 51
• Evidence: experimental; Illumina [1]

Mature sequence csi-miR166f-3p

• Accession: MIMAT0048877
• Sequence: 103 - ucggaccaggcuucauucccu - 123
• Evidence: experimental; Illumina [1]

References

1. PMID:28054378 "MicroRNA annotation of plant genomes - Do it right or not at all" Taylor RS, Tarver JE, Foroozani A, Donoghue PC Bioessays. [Epub prior to print](2017).