miRBase entry: csi-MIR166b

Stem-loop csi-MIR166b


Accession
MI0039627
Description
Citrus sinensis csi-MIR166b precursor miRNA

Literature search
7 open access papers mention csi-MIR166b
(17 sentences)

Sequence

augguugaugGGAAUGUUGUUUGGCUCGAGGGucaucuagguuuucaaaauuuucucggacuuccuaauuucuuacuuuuauuuuucccggaaauuuuuuuuguuauuugccuaugugaUCUCGGACCAGGCUUCAUUCCcgucaaccga
..((((((((((((((..((((((.((((((.((((.(((((...(((((.((((.(((............................)))))))....)))))......))))).)))))))))).))))))..))))))))))))))..

Structure
au              UU      C      G    c     ---uuu     ---u    u   acuuccuaauuuc 
  gguugaugGGAAUG  GUUUGG UCGAGG ucau uaggu      caaaa    uuuc cgg             u
  ||||||||||||||  |||||| |||||| |||| |||||      |||||    |||| |||              
  ccaacugcCCUUAC  CGGACC GGCUCU agug auccg      guuuu    aaag gcc             u
ag              UU      A      -    u     uuuauu     uuuu    -   cuuuuuauuuuca 


Annotation confidence Not enough data
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Genome context
chr3: 4882349-4882498 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from csi-MIR166b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature csi-miR166b-5p

Accession MIMAT0048872
Description Citrus sinensis csi-miR166b-5p mature miRNA
Sequence 11 - GGAAUGUUGUUUGGCUCGAGGG - 32
Evidence experimental
Illumina [1]

Mature csi-miR166b-3p

Accession MIMAT0048873
Description Citrus sinensis csi-miR166b-3p mature miRNA
Sequence 120 - UCUCGGACCAGGCUUCAUUCC - 140
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 28054378
    MicroRNA annotation of plant genomes - Do it right or not at all
    "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
    Bioessays (2017) 39:1600113