Stem-loop sequence csi-MIR160c

Accession

MI0039624 (change log)

Description

Citrus sinensis miR160c stem-loop

Literature search

4 open access papers mention csi-MIR160c
(24 sentences)

Stem-loop

   ugauaua        c       c        u     a   c       a 
5'        uaguaugc uggcucc uguaugcu uuugc aag ccaucag a
          |||||||| ||||||| |||||||| ||||| ||| |||||||  
3'        aucguacg accgagg gcgugcga aggcg uuc ggugguu g
   gauuuaa        u       a        u     g   u       a 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Csi_valencia_1.0; GCA_000317415.1): chr6: 12796053-12796156 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0039624

Mature sequence csi-miR160c-5p

• Accession: MIMAT0048866
• Sequence: 13 - ugccuggcucccuguaugcuu - 33
• Evidence: experimental; Illumina [1]

Mature sequence csi-miR160c-3p

• Accession: MIMAT0048867
• Sequence: 74 - gcgugcgaggagccaugcaug - 94
• Evidence: experimental; Illumina [1]

References

1. PMID:28054378 "MicroRNA annotation of plant genomes - Do it right or not at all" Taylor RS, Tarver JE, Foroozani A, Donoghue PC Bioessays. [Epub prior to print](2017).