Stem-loop sequence csi-MIR160b

Accession

MI0039623 (change log)

Description

Citrus sinensis miR160b stem-loop

Literature search

4 open access papers mention csi-MIR160b
(24 sentences)

Stem-loop

   guuuc      ---   u   --auu     gu     c       c          a     a  -a      g 
5'      uaaaga   agg gaa     aaugg  uaugc uggcucc uguaugccgc agcag cg  caaucu c
        ||||||   ||| |||     |||||  ||||| ||||||| |||||||||| ||||| ||  |||||| c
3'      auuucu   ucc cuu     uuauc  auacg accgagg gcaugcggug ucguu gc  guuaga g
   cguau      cuu   -   ccuuc     --     a       a          g     -  cg      g 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Csi_valencia_1.0; GCA_000317415.1): chr2: 7769210-7769352 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0039623

Mature sequence csi-miR160b-5p

• Accession: MIMAT0048864
• Sequence: 31 - ugccuggcucccuguaugccg - 51
• Evidence: experimental; Illumina [1]

Mature sequence csi-miR160b-3p

• Accession: MIMAT0048865
• Sequence: 93 - gcguacgaggagccaagcaua - 113
• Evidence: experimental; Illumina [1]

References

1. PMID:28054378 "MicroRNA annotation of plant genomes - Do it right or not at all" Taylor RS, Tarver JE, Foroozani A, Donoghue PC Bioessays. [Epub prior to print](2017).