Stem-loop sequence csi-MIR156f

Accession

MI0039619 (change log)

Description

Citrus sinensis miR156f stem-loop

Literature search

7 open access papers mention csi-MIR156f
(36 sentences)

Stem-loop

   -gguaacuugcuua  -u     cu gg           a   -           -a    c  uu   u      
5'               ac  augaa  u  uucgaugacag aga gagagaguaca  cccg ca  agc aaaga 
                 ||  |||||  |  ||||||||||| ||| |||||||||||  |||| ||  ||| |||| g
3'               ug  uauuu  a  gaguuacuguc ucu cucucucgugu  gggu gu  ucg uuucu 
   guuuauuaauuuac  uu     uu uu           c   u           ga    u  uu   -      

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Csi_valencia_1.0; GCA_000317415.1): chr4: 5738174-5738319 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0039619

Mature sequence csi-miR156f-5p

• Accession: MIMAT0048857
• Sequence: 31 - augacagaagagagagaguac - 51
• Evidence: experimental; Illumina [1]

Mature sequence csi-miR156f-3p

• Accession: MIMAT0048858
• Sequence: 95 - gcucucucuucuccugucauug - 116
• Evidence: experimental; Illumina [1]

References

1. PMID:28054378 "MicroRNA annotation of plant genomes - Do it right or not at all" Taylor RS, Tarver JE, Foroozani A, Donoghue PC Bioessays. [Epub prior to print](2017).