miRBase entry: csi-MIR156c

Stem-loop csi-MIR156c


Accession
MI0039616
Description
Citrus sinensis csi-MIR156c precursor miRNA

Literature search
7 open access papers mention csi-MIR156c
(37 sentences)

Sequence

uuaauuaauuguaaaaaggguaagaggaggUGACAGAAGAGAGUGAGCACacaugguauuuucuugcaugcuuugagauccugcuugaagcgaugcguGCUCACUCUCUAUCUGUCACCccaacccccccgccccccaaaaaucucccu
.................((((....((.((((((((((((((((((((((.(((.(((......)))..((((((((......)))))))).))).))))))))))))).))))))))))).)))).......................

Structure
------uuaauuaauuguaaaaa    aaga  a         -             a   gguauuuucuugcau        au 
                       gggu    gg ggUGACAGA AGAGAGUGAGCAC cau               gcuuugag  c
                       ||||    || ||||||||| ||||||||||||| |||               ||||||||   
                       ccca    cc CCACUGUCU UCUCUCACUCGug gua               cgaaguuc  c
ucccucuaaaaaccccccgcccc    ---a  -         A             c   --------------g        gu 


Annotation confidence Not enough data
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Genome context
chr4: 3430774-3430922 [-]

Database links

Mature csi-miR156c-5p

Accession MIMAT0048852
Description Citrus sinensis csi-miR156c-5p mature miRNA
Sequence 31 - UGACAGAAGAGAGUGAGCAC - 50
Evidence experimental
Illumina [1]

Mature csi-miR156c-3p

Accession MIMAT0048853
Description Citrus sinensis csi-miR156c-3p mature miRNA
Sequence 99 - GCUCACUCUCUAUCUGUCACC - 119
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 28054378
    MicroRNA annotation of plant genomes - Do it right or not at all
    "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
    Bioessays (2017) 39:1600113