Stem-loop sequence csi-MIR156b

Accession

MI0039615 (change log)

Description

Citrus sinensis miR156b stem-loop

Literature search

7 open access papers mention csi-MIR156b
(36 sentences)

Stem-loop

   ---uuc   -u  ua     u  a  auu   a         -   -         a        -gu      a 
5'       uca  uc  auucu gg ac   gaa uugacagaa gag agugagcac cagaggca   uguaua u
         |||  ||  ||||| || ||   ||| ||||||||| ||| ||||||||| ||||||||   ||||||  
3'       ggu  ag  uaagg cc ug   cuu gacugucuu cuc ucacucgug guuuucgu   acauau u
   ucuccc   uc  uc     -  a  -ac   c         u   g         c        ugu      g 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Csi_valencia_1.0; GCA_000317415.1): chr7: 3637037-3637179 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0039615

Mature sequence csi-miR156b-5p

• Accession: MIMAT0048850
• Sequence: 31 - ugacagaagagagugagcac - 50
• Evidence: experimental; Illumina [1]

Mature sequence csi-miR156b-3p

• Accession: MIMAT0048851
• Sequence: 92 - gcucacugcucuuucugucagcu - 114
• Evidence: experimental; Illumina [1]

References

1. PMID:28054378 "MicroRNA annotation of plant genomes - Do it right or not at all" Taylor RS, Tarver JE, Foroozani A, Donoghue PC Bioessays. [Epub prior to print](2017).