Stem-loop sequence dre-mir-24b

Accession

MI0039518 (change log)

Description

Danio rerio miR-24b stem-loop

Literature search

5 open access papers mention dre-mir-24b
(78 sentences)

Stem-loop

   -    c   c   u  g   a         uaa    --   u 
5'  gguu aac ucc gu ccu cugagcuga   cagu  uga g
    |||| ||| ||| || ||| |||||||||   ||||  ||| u
3'  ccga uug agg ca gga gacuugacu   guca  auu a
   c    a   -   c  a   c         -cg    cg   u 

Deep sequencing

21704 reads, 1.12e+03 reads per million, 11 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr2: 33905762-33905845 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dre-mir-24b

• dre-mir-23a-3: chr2: 33900435-33900512 [+]
• dre-mir-27a: chr2: 33902325-33902455 [+]
• dre-mir-24b: chr2: 33905762-33905845 [+]

Database links

• miRBase Tracker:MI0039518

Mature sequence dre-miR-24b-5p

• Accession: MIMAT0048662
• Sequence: 14 - gugccuacugagcugauaacagu - 36
• Deep sequencing: 892 reads, 10 experiments
• Evidence: not experimental

Mature sequence dre-miR-24b-3p

• Accession: MIMAT0048663
• Sequence: 52 - uggcucaguucagcaggaaccg - 73
• Deep sequencing: 20812 reads, 11 experiments
• Evidence: not experimental

References

1. PMID:26473382 "A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome" Fromm B, Billipp T, Peck LE, Johansen M, Tarver JE, King BL, Newcomb JM, Sempere LF, Flatmark K, Hovig E, Peterson KJ Annu Rev Genet. 49:213-242(2015).