miRBase entry: dre-mir-24b

Stem-loop dre-mir-24b


Accession
MI0039518
Description
Danio rerio dre-mir-24b precursor miRNA

Literature search
5 open access papers mention dre-mir-24b
(81 sentences)

Sequence

2593 reads, 308 reads per million, 11 experiments
gguucaaccuccuGUGCCUACUGAGCUGAUAACAGUugauguauuuagcacUGGCUCAGUUCAGCAGGAACCGgaguuaagccc
((((.(((.(((.((.(((.(((((((((...(((((((.....)))..))))..))))))))).))).)).)))))).)))).

Structure
-    c   c   u  G   A         UAA    --   u 
 gguu aac ucc GU CCU CUGAGCUGA   CAGU  uga g
 |||| ||| ||| || ||| |||||||||   ||||  ||| u
 ccga uug agG CA GGA GACUUGACU   GUca  auu a
c    a   -   C  A   C         -CG    cg   u 


Annotation confidence High
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Genome context
chr2: 33905762-33905845 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from dre-mir-24b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-24b-5p

Accession MIMAT0048662
Description Danio rerio dre-miR-24b-5p mature miRNA
Sequence 14 - GUGCCUACUGAGCUGAUAACAGU - 36
Evidence not_experimental

Mature dre-miR-24b-3p

Accession MIMAT0048663
Description Danio rerio dre-miR-24b-3p mature miRNA
Sequence 52 - UGGCUCAGUUCAGCAGGAACCG - 73
Evidence not_experimental

References

  1. PubMed ID: 26473382
    A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome
    "Fromm B, Billipp T, Peck LE, Johansen M, Tarver JE, King BL, Newcomb JM, Sempere LF, Flatmark K, Hovig E, Peterson KJ"
    "Annu Rev Genet (2015) 49:213-242