miRBase entry: dre-mir-181d

Stem-loop dre-mir-181d


Accession
MI0039515
Description
Danio rerio dre-mir-181d precursor miRNA

Literature search
9 open access papers mention dre-mir-181d
(18 sentences)

Sequence

11 reads, 1 reads per million, 6 experiments
uacggcugcaauaUACAUUCAUUGAUGUCGUUGGGUUucacaugugagcgaCUCACUGACCAAUGAGUGCAAAcugcaguagga
....((((((.....(((((((((..((((.(((((((((....)))..)))))).))))))))))))).....))))))....

Structure
uacg      auaUA         AU    U      --   c 
    gcugca     CAUUCAUUG  GUCG UGGGUU  uca a
    ||||||     |||||||||  |||| ||||||  |||  
    ugacgu     GUGAGUAAC  CAGU ACUCag  agu u
agga      cAAAC         --    C      cg   g 


Annotation confidence Not enough data
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Genome context
chr21: 8221660-8221743 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from dre-mir-181d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-181d-5p

Accession MIMAT0048657
Description Danio rerio dre-miR-181d-5p mature miRNA
Sequence 14 - UACAUUCAUUGAUGUCGUUGGGUU - 37
Evidence not_experimental

Mature dre-miR-181d-3p

Accession MIMAT0048658
Description Danio rerio dre-miR-181d-3p mature miRNA
Sequence 52 - CUCACUGACCAAUGAGUGCAAA - 73
Evidence not_experimental

References

  1. PubMed ID: 26473382
    A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome
    "Fromm B, Billipp T, Peck LE, Johansen M, Tarver JE, King BL, Newcomb JM, Sempere LF, Flatmark K, Hovig E, Peterson KJ"
    "Annu Rev Genet (2015) 49:213-242