miRBase entry: dre-mir-212-2

Stem-loop dre-mir-212-2


Accession
MI0039509
Description
Danio rerio dre-mir-212-2 precursor miRNA


Sequence

250 reads, 31 reads per million, 10 experiments
ucagaacuucaugACCUUGGCUCUAGACUGCUUACUgcuuauggaguccgacaguacagUAACAGUCUACAGUCAUGGCUACugaagucuggc
.((((.(((((((.((.(((((.(((((((.((((((.(..((........))..)))))))))))))).))))).)).)).)))))))))..

Structure
-u    a     -  A  U     C       C      c ua  gag 
  caga cuuca ug CC UGGCU UAGACUG UUACUg u  ug   u
  |||| ||||| || || ||||| ||||||| |||||| |  ||    
  gucu gaagu AU GG ACUGA AUCUGAC AAUgac a  ac   c
cg    -     C  C  U     C       -      - ug  agc 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr10: 35644706-35644798 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from dre-mir-212-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-212-5p

Accession MIMAT0048650
Description Danio rerio dre-miR-212-5p mature miRNA
Sequence 14 - ACCUUGGCUCUAGACUGCUUACU - 36
Evidence not_experimental

Mature dre-miR-212-3p

Accession MIMAT0048651
Description Danio rerio dre-miR-212-3p mature miRNA
Sequence 60 - UAACAGUCUACAGUCAUGGCUAC - 82
Evidence not_experimental

References

  1. PubMed ID: 26473382
    A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome
    "Fromm B, Billipp T, Peck LE, Johansen M, Tarver JE, King BL, Newcomb JM, Sempere LF, Flatmark K, Hovig E, Peterson KJ"
    "Annu Rev Genet (2015) 49:213-242