miRBase entry: dre-mir-129-3

Stem-loop dre-mir-129-3


Accession
MI0039507
Description
Danio rerio dre-mir-129-3 precursor miRNA

Literature search
3 open access papers mention dre-mir-129-3
(12 sentences)

Sequence

388 reads, 59 reads per million, 9 experiments
guccuucacggcuCUUUUUGCGGUCUGGGCUUGCUguuccuuaaaucaccagucaggAAGCCCUUACCCCAAAAAGUAUcugugugggau
(((((.(((((..(((((((.(((..((((((.(((.................))).))))))..))).)))))))...))))).)))))

Structure
     u     -cu       C   CU      G   uuccuua 
guccu cacgg   CUUUUUG GGU  GGGCUU CUg       a
||||| |||||   ||||||| |||  |||||| |||       a
uaggg guguc   GAAAAAC CCA  CCCGAA gac       u
     u     UAU       C   UU      g   ugaccac 


Annotation confidence High
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Genome context
chr18: 10670657-10670746 [+]

Database links

Mature dre-miR-129-5p

Accession MIMAT0001825
Description Danio rerio dre-miR-129-5p mature miRNA
Sequence 14 - CUUUUUGCGGUCUGGGCUUGCU - 35
Evidence experimental
cloned [1]

Mature dre-miR-129-3-3p

Accession MIMAT0048649
Description Danio rerio dre-miR-129-3-3p mature miRNA
Sequence 58 - AAGCCCUUACCCCAAAAAGUAU - 79
Evidence not_experimental

References

  1. PubMed ID: 26473382
    A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome
    "Fromm B, Billipp T, Peck LE, Johansen M, Tarver JE, King BL, Newcomb JM, Sempere LF, Flatmark K, Hovig E, Peterson KJ"
    "Annu Rev Genet (2015) 49:213-242