Stem-loop sequence gga-mir-143

AccessionMI0039505 (change log)
DescriptionGallus gallus miR-143 stem-loop
Literature search

12 open access papers mention gga-mir-143
(20 sentences)

   -      ag   a  g         g      u  -  aa 
5'  ucuccc  ccc ag ugcagugcu caucuc gg uc  u
    ||||||  ||| || ||||||||| |||||| || ||   
3'  ggaggg  ggg uc augucacga guagag cu ag  u
   a      aa   c  g         a      u  g  gg 
Get sequence
Deep sequencing
4265603 reads, 1.21e+05 reads per million, 5 experiments
Confidence Annotation confidence: high
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Genome context
Coordinates (Gallus_gallus-5.0; GCA_000002315.3) Overlapping transcripts
chr13: 8493098-8493177 [-]
Clustered miRNAs
< 10kb from gga-mir-143
gga-mir-143chr13: 8493098-8493177 [-]
gga-mir-145chr13: 8492485-8492569 [-]
Database links

Mature sequence gga-miR-143-5p

Accession MIMAT0048645

14 - 


 - 34

Get sequence
Deep sequencing2651 reads, 5 experiments
Evidence experimental; Illumina [2]

Mature sequence gga-miR-143-3p

Accession MIMAT0048646

48 - 


 - 69

Get sequence
Deep sequencing4262948 reads, 5 experiments
Evidence experimental; Illumina [2]


PMID:26473382 "A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome" Fromm B, Billipp T, Peck LE, Johansen M, Tarver JE, King BL, Newcomb JM, Sempere LF, Flatmark K, Hovig E, Peterson KJ Annu Rev Genet. 49:213-242(2015).
PMID:29079676 "Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation" Warnefors M, Mossinger K, Halbert J, Studer T, VandeBerg JL, Lindgren I, Fallahshahroudi A, Jensen P, Kaessmann H Genome Res. [Epub prior to print](2017).