Stem-loop sequence gga-mir-143

Accession

MI0039505 (change log)

Description

Gallus gallus miR-143 stem-loop

Literature search

12 open access papers mention gga-mir-143
(20 sentences)

Stem-loop

   -      ag   a  g         g      u  -  aa 
5'  ucuccc  ccc ag ugcagugcu caucuc gg uc  u
    ||||||  ||| || ||||||||| |||||| || ||   
3'  ggaggg  ggg uc augucacga guagag cu ag  u
   a      aa   c  g         a      u  g  gg 

Deep sequencing

4265603 reads, 1.21e+05 reads per million, 5 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr13: 8493098-8493177 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gga-mir-143

• gga-mir-143: chr13: 8493098-8493177 [-]
• gga-mir-145: chr13: 8492485-8492569 [-]

Database links

• miRBase Tracker:MI0039505

Mature sequence gga-miR-143-5p

• Accession: MIMAT0048645
• Sequence: 14 - ggugcagugcugcaucucugg - 34
• Deep sequencing: 2651 reads, 5 experiments
• Evidence: experimental; Illumina [2]

Mature sequence gga-miR-143-3p

• Accession: MIMAT0048646
• Sequence: 48 - ugagaugaagcacuguagcucg - 69
• Deep sequencing: 4262948 reads, 5 experiments
• Evidence: experimental; Illumina [2]

References

1. PMID:26473382 "A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome" Fromm B, Billipp T, Peck LE, Johansen M, Tarver JE, King BL, Newcomb JM, Sempere LF, Flatmark K, Hovig E, Peterson KJ Annu Rev Genet. 49:213-242(2015).
2. PMID:29079676 "Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation" Warnefors M, Mossinger K, Halbert J, Studer T, VandeBerg JL, Lindgren I, Fallahshahroudi A, Jensen P, Kaessmann H Genome Res. [Epub prior to print](2017).