miRBase entry: ocu-mir-105b

Stem-loop ocu-mir-105b


Accession
MI0039497
Description
Oryctolagus cuniculus ocu-mir-105b precursor miRNA


Sequence

UGAAAUGCUCAAACAUCAGUGGUaguuguucaugcacCAUGAUUGUCUGAGCAUAUGCC
....(((((((.(((...(((((.((.......)))))))...))).))))))).....

Structure
-UGAA       A   UCA     a  ug 
     AUGCUCA ACA   GUGGU gu  u
     ||||||| |||   ||||| ||  u
     UACGAGU UGU   UACca cg  c
CCGUA       C   UAG     -  ua 


Annotation confidence Not enough data
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Genome context
GL018731.1: 388968-389026 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ocu-mir-105b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ocu-miR-105b-5p

Accession MIMAT0048629
Description Oryctolagus cuniculus ocu-miR-105b-5p mature miRNA
Sequence 1 - UGAAAUGCUCAAACAUCAGUGGU - 23
Evidence experimental
Illumina [1]

Mature ocu-miR-105b-3p

Accession MIMAT0048630
Description Oryctolagus cuniculus ocu-miR-105b-3p mature miRNA
Sequence 38 - CAUGAUUGUCUGAGCAUAUGCC - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344