miRBase entry: ocu-mir-875

Stem-loop ocu-mir-875


Accession
MI0039471
Description
Oryctolagus cuniculus ocu-mir-875 precursor miRNA


Sequence

UAUACCUCAGUUUUAUCAGGUGuuauuuaaaaucaCCUGGAAAUACUGAGGUUAUGU
...((((((((.((.(((((((...........))))))).)).)))))))).....

Structure
--UAU        U  A       uuau 
     ACCUCAGU UU UCAGGUG    u
     |||||||| || |||||||    u
     UGGAGUCA AA GGUCCac    a
UGUAU        U  A       uaaa 


Annotation confidence Not enough data
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Genome context
CM000792.1: 115199517-115199573 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ocu-mir-875
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ocu-miR-875-5p

Accession MIMAT0048577
Description Oryctolagus cuniculus ocu-miR-875-5p mature miRNA
Sequence 1 - UAUACCUCAGUUUUAUCAGGUG - 22
Evidence experimental
Illumina [1]

Mature ocu-miR-875-3p

Accession MIMAT0048578
Description Oryctolagus cuniculus ocu-miR-875-3p mature miRNA
Sequence 36 - CCUGGAAAUACUGAGGUUAUGU - 57
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344