miRBase entry: ocu-mir-539

Stem-loop ocu-mir-539


Accession
MI0039443
Description
Oryctolagus cuniculus ocu-mir-539 precursor miRNA


Sequence

GGAGAAAUUAUCCUUGGUGUGUUcgcuuuauucgugaugaauCAUACAAGGACAAUUUCUUUUU
.((((((((.((((((.(((((((((.........).)))).)))))))))).))))))))...

Structure
--G        A      G    -    - uuu 
   GAGAAAUU UCCUUG UGUG UUcg c   a
   |||||||| |||||| |||| |||| |   u
   UUCUUUAA AGGAAC AUAC aagu g   u
UUU        C      -    u    a ugc 


Annotation confidence Not enough data
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Genome context
GL019048.1: 137513-137576 [+]
Clustered miRNAs
14 other miRNAs are < 10 kb from ocu-mir-539
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ocu-miR-539-5p

Accession MIMAT0048521
Description Oryctolagus cuniculus ocu-miR-539-5p mature miRNA
Sequence 1 - GGAGAAAUUAUCCUUGGUGUGUU - 23
Evidence experimental
Illumina [1]

Mature ocu-miR-539-3p

Accession MIMAT0048522
Description Oryctolagus cuniculus ocu-miR-539-3p mature miRNA
Sequence 43 - CAUACAAGGACAAUUUCUUUUU - 64
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344