miRBase entry: ocu-mir-509c

Stem-loop ocu-mir-509c

Accession

MI0039441

Description

Oryctolagus cuniculus ocu-mir-509c precursor miRNA

Sequence

UACUCAAGACAGUGGCAAUCAUGuauaauuaaauaUGAUUGACACGUCUAUGAGUGGA
((((((((((.(((.(((((((((........))))))))).))))))).))))))..

Structure

--      -    A   G         aua 
  UACUCA AGAC GUG CAAUCAUGu   a
  |||||| |||| ||| |||||||||    
  GUGAGU UCUG CAC GUUAGUaua   u
AG      A    -   A         aau

Annotation confidence Not enough data

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Genome context

GL018700.1: 10687771-10687828 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ocu-mir-509c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ocu-miR-509c-5p

Accession	MIMAT0048517
Description	Oryctolagus cuniculus ocu-miR-509c-5p mature miRNA
Sequence	1 - UACUCAAGACAGUGGCAAUCAUG - 23
Evidence	experimental Illumina [1]

Mature ocu-miR-509c-3p

Accession	MIMAT0048518
Description	Oryctolagus cuniculus ocu-miR-509c-3p mature miRNA
Sequence	36 - UGAUUGACACGUCUAUGAGUGGA - 58
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344