miRBase entry: ocu-mir-509b

Stem-loop ocu-mir-509b


Accession
MI0039440
Description
Oryctolagus cuniculus ocu-mir-509b precursor miRNA


Sequence

UACUCAAGACAGUGGCAAUCAugucuaauuaaaugugAUUGACACGUCUGUGAGUAGA
((((((((((.(((.(((((((((........))))))))).))))))).))))))..

Structure
--      -    A   G         cua 
  UACUCA AGAC GUG CAAUCAugu   a
  |||||| |||| ||| |||||||||    
  AUGAGU UCUG CAC GUUAgugua   u
AG      G    -   A         aau 


Annotation confidence Not enough data
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Genome context
GL018700.1: 10711587-10711644 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from ocu-mir-509b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ocu-miR-509b-5p

Accession MIMAT0048515
Description Oryctolagus cuniculus ocu-miR-509b-5p mature miRNA
Sequence 1 - UACUCAAGACAGUGGCAAUCA - 21
Evidence experimental
Illumina [1]

Mature ocu-miR-509b-3p

Accession MIMAT0048516
Description Oryctolagus cuniculus ocu-miR-509b-3p mature miRNA
Sequence 38 - AUUGACACGUCUGUGAGUAGA - 58
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344