miRBase entry: ocu-mir-425

Stem-loop ocu-mir-425


Accession
MI0039404
Description
Oryctolagus cuniculus ocu-mir-425 precursor miRNA


Sequence

AAUGACACGAUCACUCCCGUUGAGugggcacccaggaagcCAUCGGGAAUGUCGUGUCCGCCC
...(((((((.((.(((((.((.((...(.....)...)))).))))).))))))))).....

Structure
--AAU       U  C     U  A  ggg a 
     GACACGA CA UCCCG UG Gu   c c
     ||||||| || ||||| || ||   | c
     CUGUGCU GU AGGGC AC cg   g c
CCCGC       -  A     U  -  aag a 


Annotation confidence Not enough data
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Genome context
CM000798.1: 16649322-16649384 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ocu-mir-425
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ocu-miR-425-5p

Accession MIMAT0048445
Description Oryctolagus cuniculus ocu-miR-425-5p mature miRNA
Sequence 1 - AAUGACACGAUCACUCCCGUUGAG - 24
Evidence experimental
Illumina [1]

Mature ocu-miR-425-3p

Accession MIMAT0048446
Description Oryctolagus cuniculus ocu-miR-425-3p mature miRNA
Sequence 41 - CAUCGGGAAUGUCGUGUCCGCCC - 63
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344