miRBase entry: ocu-mir-381

Stem-loop ocu-mir-381


Accession
MI0039394
Description
Oryctolagus cuniculus ocu-mir-381 precursor miRNA


Sequence

AGCGAGGUUGCCCUGUGUAUAUUcuguuuauugacaugcaaUAUACAAGGGCAAGCUCUCUGU
((.(((.(((((((.(((((((((((((....)))).).))))))))))))))).))).))..

Structure
--  C   G       G        - -    u 
  AG GAG UUGCCCU UGUAUAUU c uguu a
  || ||| ||||||| |||||||| | ||||  
  UC CUC AACGGGA ACAUAUaa g acag u
UG  U   G       -        c u    u 


Annotation confidence Not enough data
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Genome context
GL019048.1: 136582-136644 [+]
Clustered miRNAs
14 other miRNAs are < 10 kb from ocu-mir-381
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ocu-miR-381-5p

Accession MIMAT0048425
Description Oryctolagus cuniculus ocu-miR-381-5p mature miRNA
Sequence 1 - AGCGAGGUUGCCCUGUGUAUAUU - 23
Evidence experimental
Illumina [1]

Mature ocu-miR-381-3p

Accession MIMAT0048426
Description Oryctolagus cuniculus ocu-miR-381-3p mature miRNA
Sequence 42 - UAUACAAGGGCAAGCUCUCUGU - 63
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344