miRBase entry: ocu-mir-377

Stem-loop ocu-mir-377


Accession
MI0039391
Description
Oryctolagus cuniculus ocu-mir-377 precursor miRNA


Sequence

AGAGGUUGCCCUUGGUGAAUUCgcuuuauugauguugaAUCACACAAAGGCAACUUUUGU
((((((((((.(((((((.(((((.........).)))))))).))).))))))))))..

Structure
--          C   -    A    - uuu 
  AGAGGUUGCC UUG GUGA UUCg c   a
  |||||||||| ||| |||| |||| |   u
  UUUUCAACGG AAC CACU Aagu g   u
UG          A   A    -    u uag 


Annotation confidence Not enough data
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Genome context
GL019048.1: 150228-150287 [+]
Clustered miRNAs
11 other miRNAs are < 10 kb from ocu-mir-377
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ocu-miR-377-5p

Accession MIMAT0048419
Description Oryctolagus cuniculus ocu-miR-377-5p mature miRNA
Sequence 1 - AGAGGUUGCCCUUGGUGAAUUC - 22
Evidence experimental
Illumina [1]

Mature ocu-miR-377-3p

Accession MIMAT0048420
Description Oryctolagus cuniculus ocu-miR-377-3p mature miRNA
Sequence 39 - AUCACACAAAGGCAACUUUUGU - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344