miRBase entry: ocu-mir-222

Stem-loop ocu-mir-222

Accession

MI0039358

Description

Oryctolagus cuniculus ocu-mir-222 precursor miRNA

Sequence

GGCUCAGUAGCCAGUGUAGAUCCugucuuuuguaaucaguAGCUACAUCUGGCUACUGGGUCUC
(((((((((((((((((((...(((...........)))...))))).))))))))))))))..

Structure

--              -     AUC   ucuu 
  GGCUCAGUAGCCAG UGUAG   Cug    u
  |||||||||||||| |||||   |||    u
  CUGGGUCAUCGGUC ACAUC   gac    g
CU              U     GAu   uaau

Annotation confidence Not enough data

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Genome context

CM000811.1: 30973574-30973637 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ocu-mir-222

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ocu-miR-222-5p

Accession	MIMAT0048356
Description	Oryctolagus cuniculus ocu-miR-222-5p mature miRNA
Sequence	1 - GGCUCAGUAGCCAGUGUAGAUCC - 23
Evidence	experimental Illumina [1]

Mature ocu-miR-222-3p

Accession	MIMAT0048357
Description	Oryctolagus cuniculus ocu-miR-222-3p mature miRNA
Sequence	41 - AGCUACAUCUGGCUACUGGGUCUC - 64
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344