miRBase entry: ocu-mir-216a

Stem-loop ocu-mir-216a

Accession

MI0039350

Description

Oryctolagus cuniculus ocu-mir-216a precursor miRNA

Sequence

UAAUCUCAGCUGGCAACUGUGAGauauucauacaaucccuCACAGUGGUCUCUGGGGUUAUG
(((((((((..(((.((((((((..(((.....)))..)))))))).))).)))))))))..

Structure

--         CU   A        au   c 
  UAAUCUCAG  GGC ACUGUGAG  auu a
  |||||||||  ||| ||||||||  ||| u
  AUUGGGGUC  CUG UGACACuc  uaa a
GU         -U   G        cc   c

Annotation confidence Not enough data

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Genome context

CM000791.1: 130101540-130101601 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ocu-mir-216a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ocu-miR-216a-5p

Accession	MIMAT0048341
Description	Oryctolagus cuniculus ocu-miR-216a-5p mature miRNA
Sequence	1 - UAAUCUCAGCUGGCAACUGUGAG - 23
Evidence	experimental Illumina [1]

Mature ocu-miR-216a-3p

Accession	MIMAT0048342
Description	Oryctolagus cuniculus ocu-miR-216a-3p mature miRNA
Sequence	41 - CACAGUGGUCUCUGGGGUUAUG - 62
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344