miRBase entry: ocu-mir-199a-1

Stem-loop ocu-mir-199a-1


Accession
MI0039338
Description
Oryctolagus cuniculus ocu-mir-199a-1 precursor miRNA

Literature search
2 open access papers mention ocu-mir-199a-1
(15 sentences)

Sequence

CCCAGUGUUCAGACUACCUGUUCaggggacuccagauguguACAGUAGUCUGCACAUUGGUUA
.(((((((.((((((((.(((.((.(..........).)).))))))))))).)))))))...

Structure
--C       U        C   U  g ggac 
   CCAGUGU CAGACUAC UGU Ca g    u
   ||||||| |||||||| ||| || |     
   GGUUACA GUCUGAUG ACA gu u    c
AUU       C        -   u  g agac 


Annotation confidence Not enough data
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Genome context
GL018914.1: 201980-202042 [+]

Database links

Mature ocu-miR-199a-5p

Accession MIMAT0048319
Description Oryctolagus cuniculus ocu-miR-199a-5p mature miRNA
Sequence 1 - CCCAGUGUUCAGACUACCUGUUC - 23
Evidence experimental
Illumina [1]

Mature ocu-miR-199a-3p

Accession MIMAT0048320
Description Oryctolagus cuniculus ocu-miR-199a-3p mature miRNA
Sequence 42 - ACAGUAGUCUGCACAUUGGUUA - 63
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344