miRBase entry: ocu-mir-181c

Stem-loop ocu-mir-181c

Accession

MI0039319

Description

Oryctolagus cuniculus ocu-mir-181c precursor miRNA

Sequence

AACAUUCAACCUGUCGGUGAGUUUggaaggcucaggcaaACCAUCGACCGUUGAGUGGACC
..((((((((..(((((((.(((((...........)))))))))))).))))))))....

Structure

--AA        CU       A     gaag 
    CAUUCAAC  GUCGGUG GUUUg    g
    ||||||||  ||||||| |||||    c
    GUGAGUUG  CAGCUAC CAaac    u
CCAG        -C       -     ggac

Annotation confidence Not enough data

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Genome context

GL019596.1: 4071-4131 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ocu-mir-181c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ocu-miR-181c-5p

Accession	MIMAT0048281
Description	Oryctolagus cuniculus ocu-miR-181c-5p mature miRNA
Sequence	1 - AACAUUCAACCUGUCGGUGAGUUU - 24
Evidence	experimental Illumina [1]

Mature ocu-miR-181c-3p

Accession	MIMAT0048282
Description	Oryctolagus cuniculus ocu-miR-181c-3p mature miRNA
Sequence	40 - ACCAUCGACCGUUGAGUGGACC - 61
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344