miRBase entry: ocu-mir-154

Stem-loop ocu-mir-154


Accession
MI0039313
Description
Oryctolagus cuniculus ocu-mir-154 precursor miRNA


Sequence

UAGGUUAUCCGUGUUGCCUUCGcuguacucgugacgAAUCAUACACGGUUGGCCUAUU
(((((((.((((((....(((((.........).))))....)))))).)))))))..

Structure
--       U      UGCC    - ugu 
  UAGGUUA CCGUGU    UUCG c   a
  ||||||| ||||||    |||| |   c
  AUCCGGU GGCACA    AAgc g   u
UU       U      UACU    a ugc 


Annotation confidence Not enough data
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Genome context
GL019048.1: 147896-147953 [+]
Clustered miRNAs
13 other miRNAs are < 10 kb from ocu-mir-154
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ocu-miR-154-5p

Accession MIMAT0048271
Description Oryctolagus cuniculus ocu-miR-154-5p mature miRNA
Sequence 1 - UAGGUUAUCCGUGUUGCCUUCG - 22
Evidence experimental
Illumina [1]

Mature ocu-miR-154-3p

Accession MIMAT0048272
Description Oryctolagus cuniculus ocu-miR-154-3p mature miRNA
Sequence 37 - AAUCAUACACGGUUGGCCUAUU - 58
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344