miRBase entry: ocu-mir-141

Stem-loop ocu-mir-141


Accession
MI0039299
Description
Oryctolagus cuniculus ocu-mir-141 precursor miRNA

Literature search
1 open access papers mention ocu-mir-141
(1 sentences)

Sequence

CAUCUUCCAGCACAGUGUUGGAuggucuacuugugaagcuccUAACACUGUCUGGUAAAGAUGGC
((((((((((.(((((((((((...((.......))...))).))))))))))))..))))))..

Structure
--      --    C        -   ugg  ua 
  CAUCUU  CCAG ACAGUGUU GGA   uc  c
  ||||||  |||| |||||||| |||   ||  u
  GUAGAA  GGUC UGUCACAA ccu   ag  u
CG      AU    -        U   cga  ug 


Annotation confidence Not enough data
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Genome context
CM000797.1: 32967353-32967417 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ocu-mir-141
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ocu-miR-141-5p

Accession MIMAT0048243
Description Oryctolagus cuniculus ocu-miR-141-5p mature miRNA
Sequence 1 - CAUCUUCCAGCACAGUGUUGGA - 22
Evidence experimental
Illumina [1]

Mature ocu-miR-141-3p

Accession MIMAT0048244
Description Oryctolagus cuniculus ocu-miR-141-3p mature miRNA
Sequence 43 - UAACACUGUCUGGUAAAGAUGGC - 65
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344