miRBase entry: ocu-mir-133b

Stem-loop ocu-mir-133b


Accession
MI0039288
Description
Oryctolagus cuniculus ocu-mir-133b precursor miRNA


Sequence

GCUGGUCAAACGGAACCAAGUCcgucuuccugagaggUUUGGUCCCCUUCAACCAGCUA
((((((..((.((.((((((.((.((((...)))))))))))).)).))..))))))..

Structure
--      CA  C  A      U  g    c 
  GCUGGU  AA GG ACCAAG Cc ucuu  
  ||||||  || || |||||| || |||| c
  CGACCA  UU CC UGGUUU gg agag  
AU      AC  C  C      -  -    u 


Annotation confidence Not enough data
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Genome context
CM000801.1: 41642532-41642590 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ocu-mir-133b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ocu-miR-133b-5p

Accession MIMAT0048223
Description Oryctolagus cuniculus ocu-miR-133b-5p mature miRNA
Sequence 1 - GCUGGUCAAACGGAACCAAGUC - 22
Evidence experimental
Illumina [1]

Mature ocu-miR-133b-3p

Accession MIMAT0048224
Description Oryctolagus cuniculus ocu-miR-133b-3p mature miRNA
Sequence 38 - UUUGGUCCCCUUCAACCAGCUA - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344