miRBase entry: ocu-mir-133a

Stem-loop ocu-mir-133a


Accession
MI0039287
Description
Oryctolagus cuniculus ocu-mir-133a precursor miRNA


Sequence

AGCUGGUAAAAUGGAACCAAAUCgccucuucaauggaUUUGGUCCCCUUCAACCAGCUGU
(((((((..((.((.((((((((............)))))))).)).))..)))))))..

Structure
--       AA  U  A        gccuc 
  AGCUGGU  AA GG ACCAAAUC     u
  |||||||  || || ||||||||      
  UCGACCA  UU CC UGGUUUag     u
UG       AC  C  C        guaac 


Annotation confidence Not enough data
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Genome context
CM000798.1: 63180526-63180585 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ocu-mir-133a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ocu-miR-133a-5p

Accession MIMAT0048221
Description Oryctolagus cuniculus ocu-miR-133a-5p mature miRNA
Sequence 1 - AGCUGGUAAAAUGGAACCAAAUC - 23
Evidence experimental
Illumina [1]

Mature ocu-miR-133a-3p

Accession MIMAT0048222
Description Oryctolagus cuniculus ocu-miR-133a-3p mature miRNA
Sequence 38 - UUUGGUCCCCUUCAACCAGCUGU - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344