miRBase entry: ocu-mir-130b

Stem-loop ocu-mir-130b

Accession

MI0039286

Description

Oryctolagus cuniculus ocu-mir-130b precursor miRNA

Sequence

ACUCUUUCCCUGUUGCACUACUguggaccacugggaagCAGUGCAAUGAUGAAAGGGCAU
.(((((((..(((((((((.((.....((...))..)).)))))))))..)))))))...

Structure

--A       CC         A  gugga  a 
   CUCUUUC  UGUUGCACU CU     cc  
   |||||||  ||||||||| ||     || c
   GGGAAAG  GUAACGUGA ga     gg  
UAC       UA         C  ---ag  u

Annotation confidence Not enough data

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Genome context

CM000810.1: 5522961-5523020 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ocu-mir-130b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ocu-miR-130b-5p

Accession	MIMAT0048219
Description	Oryctolagus cuniculus ocu-miR-130b-5p mature miRNA
Sequence	1 - ACUCUUUCCCUGUUGCACUACU - 22
Evidence	experimental Illumina [1]

Mature ocu-miR-130b-3p

Accession	MIMAT0048220
Description	Oryctolagus cuniculus ocu-miR-130b-3p mature miRNA
Sequence	39 - CAGUGCAAUGAUGAAAGGGCAU - 60
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344