miRBase entry: ocu-mir-106b

Stem-loop ocu-mir-106b


Accession
MI0039273
Description
Oryctolagus cuniculus ocu-mir-106b precursor miRNA


Sequence

UAAAGUGCUGACAGUGCAGAUAgugguccuguccgugcuaCCGCACUGUGGGUACUUGCUG
..(((((((.(((((((.(.((((((......))..))))).))))))).)))))))....

Structure
--UA       G       A A    --  uc 
    AAGUGCU ACAGUGC G UAgu  gg  c
    ||||||| ||||||| | ||||  ||   
    UUCAUGG UGUCACG C aucg  cc  u
GUCG       G       C -    ug  ug 


Annotation confidence Not enough data
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Genome context
GL018760.1: 102749-102809 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ocu-mir-106b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ocu-miR-106b-5p

Accession MIMAT0048197
Description Oryctolagus cuniculus ocu-miR-106b-5p mature miRNA
Sequence 1 - UAAAGUGCUGACAGUGCAGAUA - 22
Evidence experimental
Illumina [1]

Mature ocu-miR-106b-3p

Accession MIMAT0048198
Description Oryctolagus cuniculus ocu-miR-106b-3p mature miRNA
Sequence 41 - CCGCACUGUGGGUACUUGCUG - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344