miRBase entry: ocu-mir-29a

Stem-loop ocu-mir-29a


Accession
MI0039243
Description
Oryctolagus cuniculus ocu-mir-29a precursor miRNA

Literature search
2 open access papers mention ocu-mir-29a
(2 sentences)

Sequence

ACUGAUUUCUUUUGGUGUUCAGAgucaauagaauuuucUAGCACCAUCUGAAAUCGGUUA
(((((((((...(((((((.((((...........)))))))))))...)))))))))..

Structure
--         UUU       C    ucaa 
  ACUGAUUUC   UGGUGUU AGAg    u
  |||||||||   ||||||| ||||    a
  UGGCUAAAG   ACCACGA Ucuu    g
AU         UCU       -    uuaa 


Annotation confidence Not enough data
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Genome context
CM000796.1: 9515490-9515549 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ocu-mir-29a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ocu-miR-29a-5p

Accession MIMAT0048143
Description Oryctolagus cuniculus ocu-miR-29a-5p mature miRNA
Sequence 1 - ACUGAUUUCUUUUGGUGUUCAGA - 23
Evidence experimental
Illumina [1]

Mature ocu-miR-29a-3p

Accession MIMAT0048144
Description Oryctolagus cuniculus ocu-miR-29a-3p mature miRNA
Sequence 39 - UAGCACCAUCUGAAAUCGGUUA - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344