miRBase entry: ocu-mir-25

Stem-loop ocu-mir-25


Accession
MI0039238
Description
Oryctolagus cuniculus ocu-mir-25 precursor miRNA

Literature search
1 open access papers mention ocu-mir-25
(1 sentences)

Sequence

AGGCGGAGACUUGGGCAAUUGCUggacgcugcccugggCAUUGCACUUGUCUCGGUCUGA
((((.(((((..(.(((((..((((........))))..))))).)..))))).))))..

Structure
--    G     UU G     UG    acg 
  AGGC GAGAC  G GCAAU  CUgg   c
  |||| |||||  | |||||  ||||    
  UCUG CUCUG  C CGUUA  gguc   u
AG    G     UU A     Cg    ccg 


Annotation confidence Not enough data
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Genome context
GL018760.1: 103178-103237 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ocu-mir-25
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ocu-miR-25-5p

Accession MIMAT0048133
Description Oryctolagus cuniculus ocu-miR-25-5p mature miRNA
Sequence 1 - AGGCGGAGACUUGGGCAAUUGCU - 23
Evidence experimental
Illumina [1]

Mature ocu-miR-25-3p

Accession MIMAT0048134
Description Oryctolagus cuniculus ocu-miR-25-3p mature miRNA
Sequence 39 - CAUUGCACUUGUCUCGGUCUGA - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344