miRBase entry: ocu-mir-20b

Stem-loop ocu-mir-20b


Accession
MI0039232
Description
Oryctolagus cuniculus ocu-mir-20b precursor miRNA


Sequence

CAAAGUGCUCAUAGUGCAGGUAGUucuagcaucauucUACUGUAGUGUGAGCACUUCUAG
..(((((((((((.(((((.(((.............)))))))).)))))))))))....

Structure
--CA           G     G   Uucua 
    AAGUGCUCAUA UGCAG UAG     g
    ||||||||||| ||||| |||     c
    UUCACGAGUGU AUGUC AUc     a
GAUC           G     -   uuacu 


Annotation confidence Not enough data
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Genome context
CM000811.1: 108518633-108518692 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from ocu-mir-20b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ocu-miR-20b-5p

Accession MIMAT0048122
Description Oryctolagus cuniculus ocu-miR-20b-5p mature miRNA
Sequence 1 - CAAAGUGCUCAUAGUGCAGGUAGU - 24
Evidence experimental
Illumina [1]

Mature ocu-miR-20b-3p

Accession MIMAT0048123
Description Oryctolagus cuniculus ocu-miR-20b-3p mature miRNA
Sequence 38 - UACUGUAGUGUGAGCACUUCUAG - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344