miRBase entry: ocu-mir-16b

Stem-loop ocu-mir-16b

Accession

MI0039224

Description

Oryctolagus cuniculus ocu-mir-16b precursor miRNA

Sequence

UAGCAGCACGUAAAUAUUGGCGUagugaaauaaauauuaaacACCAAUAUUAUUGUGCUGCUUUA
.(((((((((..((((((((.((.................)).))))))))..)))))))))...

Structure

--U         UA        C  agugaaa 
   AGCAGCACG  AAUAUUGG GU       u
   |||||||||  |||||||| ||       a
   UCGUCGUGU  UUAUAACC ca       a
AUU         UA        A  aauuaua

Annotation confidence Not enough data

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Genome context

CM000803.1: 54807993-54808057 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ocu-mir-16b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ocu-miR-16b-5p

Accession	MIMAT0048107
Description	Oryctolagus cuniculus ocu-miR-16b-5p mature miRNA
Sequence	1 - UAGCAGCACGUAAAUAUUGGCGU - 23
Evidence	experimental Illumina [1]

Mature ocu-miR-16b-3p

Accession	MIMAT0048108
Description	Oryctolagus cuniculus ocu-miR-16b-3p mature miRNA
Sequence	43 - ACCAAUAUUAUUGUGCUGCUUUA - 65
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344