miRBase entry: ocu-mir-16a

Stem-loop ocu-mir-16a

Accession

MI0039223

Description

Oryctolagus cuniculus ocu-mir-16a precursor miRNA

Sequence

UAGCAGCACGUAAAUACUGGCGuuaagauucuaaaauuaucuCCAGUAUUAACUGUGCUGCUGAA
(((((((((((.((((((((.(.(((..........))).).)))))))).)).)))))))))..

Structure

--         -  A        C u   gauu 
  UAGCAGCAC GU AAUACUGG G uaa    c
  ||||||||| || |||||||| | |||     
  GUCGUCGUG CA UUAUGACC c auu    u
AA         U  A        u u   aaaa

Annotation confidence Not enough data

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Genome context

GL018705.1: 3664988-3665052 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ocu-mir-16a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ocu-miR-16a-5p

Accession	MIMAT0048105
Description	Oryctolagus cuniculus ocu-miR-16a-5p mature miRNA
Sequence	1 - UAGCAGCACGUAAAUACUGGCG - 22
Evidence	experimental Illumina [1]

Mature ocu-miR-16a-3p

Accession	MIMAT0048106
Description	Oryctolagus cuniculus ocu-miR-16a-3p mature miRNA
Sequence	43 - CCAGUAUUAACUGUGCUGCUGAA - 65
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344