miRBase entry: dno-mir-539

Stem-loop dno-mir-539


Accession
MI0039149
Description
Dasypus novemcinctus dno-mir-539 precursor miRNA


Sequence

GGAGAAAUUAUCCUUGGUGUGUUcgcuuuauuuaugaugaauCAUACAAGGACAAUUUCUUUUU
.((((((((.((((((.(((((((((.........).)))).)))))))))).))))))))...

Structure
--G        A      G    -    - uuu 
   GAGAAAUU UCCUUG UGUG UUcg c   a
   |||||||| |||||| |||| |||| |   u
   UUCUUUAA AGGAAC AUAC aagu g   u
UUU        C      -    u    a uau 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
JH578221.1: 147994-148057 [+]
Clustered miRNAs
15 other miRNAs are < 10 kb from dno-mir-539
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dno-miR-539-5p

Accession MIMAT0047965
Description Dasypus novemcinctus dno-miR-539-5p mature miRNA
Sequence 1 - GGAGAAAUUAUCCUUGGUGUGUU - 23
Evidence experimental
Illumina [1]

Mature dno-miR-539-3p

Accession MIMAT0047966
Description Dasypus novemcinctus dno-miR-539-3p mature miRNA
Sequence 43 - CAUACAAGGACAAUUUCUUUUU - 64
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344