miRBase entry: cpo-mir-12075

Stem-loop cpo-mir-12075

Accession

MI0038875

Description

Cavia porcellus cpo-mir-12075 precursor miRNA

Sequence

uuuauuacaCAACUCCAGGAUUCGUCGAUCAuguguaauuaaguuugAUCGGCGUCUCCUGAAGUGAAGuaauaca
..((((((...(((.(((((..(((((((((..............)))))))))..))))).)))...))))))..

Structure

uu      aCA   C     UU         ugugua 
  uauuac   ACU CAGGA  CGUCGAUCA      a
  ||||||   ||| |||||  |||||||||       
  auaauG   UGA GUCCU  GCGGCUAgu      u
ac      AAG   A     CU         uugaau

Annotation confidence Not enough data

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Genome context

DS562939.1: 2702877-2702952 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cpo-mir-12075

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpo-miR-12075-5p

Accession	MIMAT0047451
Description	Cavia porcellus cpo-miR-12075-5p mature miRNA
Sequence	10 - CAACUCCAGGAUUCGUCGAUCA - 31
Evidence	experimental Illumina [1]

Mature cpo-miR-12075-3p

Accession	MIMAT0047452
Description	Cavia porcellus cpo-miR-12075-3p mature miRNA
Sequence	48 - AUCGGCGUCUCCUGAAGUGAAG - 69
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344