miRBase entry: cpo-mir-543

Stem-loop cpo-mir-543


Accession
MI0038821
Description
Cavia porcellus cpo-mir-543 precursor miRNA


Sequence

AAGUUGCCCGUGUCUUUUUCGcuguauuugugacgAAACAUUCGCGGUGCACUUCUU
((((.(((((((....((((((.........).)))))....))))).))))))...

Structure
---    U  -     UCUU     - ugu 
   AAGU GC CCGUG    UUUCG c   a
   |||| || |||||    ||||| |   u
   UUCA CG GGCGC    AAAgc g   u
UUC    -  U     UUAC     a ugu 


Annotation confidence Not enough data
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Genome context
DS562966.1: 1090491-1090547 [+]
Clustered miRNAs
19 other miRNAs are < 10 kb from cpo-mir-543
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpo-miR-543-5p

Accession MIMAT0047343
Description Cavia porcellus cpo-miR-543-5p mature miRNA
Sequence 1 - AAGUUGCCCGUGUCUUUUUCG - 21
Evidence experimental
Illumina [1]

Mature cpo-miR-543-3p

Accession MIMAT0047344
Description Cavia porcellus cpo-miR-543-3p mature miRNA
Sequence 36 - AAACAUUCGCGGUGCACUUCUU - 57
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344