miRBase entry: cpo-mir-541

Stem-loop cpo-mir-541


Accession
MI0038819
Description
Cavia porcellus cpo-mir-541 precursor miRNA


Sequence

AGAGGAUUCUGCUGCCGGUCCCACUccaaaguuuauaaaaugggUGGUGGGCACAGAAUCCGGACU
...((((((((.((((.(..((((.(((............)))))))).)))))))))))).....

Structure
--AGA        C    G UC    U   aaguu 
     GGAUUCUG UGCC G  CCAC cca     u
     |||||||| |||| |  |||| |||      
     CCUAAGAC ACGG U  GGUg ggu     a
UCAGG        -    G --    -   aaaau 


Annotation confidence Not enough data
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Genome context
DS562966.1: 1116256-1116321 [+]
Clustered miRNAs
12 other miRNAs are < 10 kb from cpo-mir-541
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpo-miR-541-5p

Accession MIMAT0047339
Description Cavia porcellus cpo-miR-541-5p mature miRNA
Sequence 1 - AGAGGAUUCUGCUGCCGGUCCCACU - 25
Evidence experimental
Illumina [1]

Mature cpo-miR-541-3p

Accession MIMAT0047340
Description Cavia porcellus cpo-miR-541-3p mature miRNA
Sequence 45 - UGGUGGGCACAGAAUCCGGACU - 66
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344