miRBase entry: cpo-mir-532

Stem-loop cpo-mir-532

Accession

MI0038817

Description

Cavia porcellus cpo-mir-532 precursor miRNA

Sequence

CAUGCCUUGAGUGUAGGACCGUuggcgucuuaauuacCCUCCCACACCCAAGGCUUGCA
((.((((((.((((.(((.....((.((.......))))))).)))).)))))).))..

Structure

--  U      A    A   CCGUu  c  cu 
  CA GCCUUG GUGU GGA     gg gu  u
  || |||||| |||| |||     || ||  a
  GU CGGAAC CACA CCU     CC ca  a
AC  U      C    C   -----  -  uu

Annotation confidence Not enough data

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Genome context

DS562987.1: 3003104-3003162 [+]

Clustered miRNAs

6 other miRNAs are < 10 kb from cpo-mir-532

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpo-miR-532-5p

Accession	MIMAT0047335
Description	Cavia porcellus cpo-miR-532-5p mature miRNA
Sequence	1 - CAUGCCUUGAGUGUAGGACCGU - 22
Evidence	experimental Illumina [1]

Mature cpo-miR-532-3p

Accession	MIMAT0047336
Description	Cavia porcellus cpo-miR-532-3p mature miRNA
Sequence	38 - CCUCCCACACCCAAGGCUUGCA - 59
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344