miRBase entry: cpo-mir-509e

Stem-loop cpo-mir-509e

Accession

MI0038814

Description

Cavia porcellus cpo-mir-509e precursor miRNA

Sequence

UCCCUCAGAGAGUUUCAAUCAUUuaucuuuggacaUGAUUGCAGCAUCUGAGGGAGA
(((((((((..(((.(((((((...((....)).))))))).))).)))))))))..

Structure

--         GA   U       Uua  u 
  UCCCUCAGA  GUU CAAUCAU   uc u
  |||||||||  ||| |||||||   ||  
  AGGGAGUCU  CGA GUUAGUa   ag u
AG         -A   C       --c  g

Annotation confidence Not enough data

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Genome context

DS562939.1: 2725364-2725420 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cpo-mir-509e

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpo-miR-509e-5p

Accession	MIMAT0047329
Description	Cavia porcellus cpo-miR-509e-5p mature miRNA
Sequence	1 - UCCCUCAGAGAGUUUCAAUCAUU - 23
Evidence	not_experimental

Mature cpo-miR-509e-3p

Accession	MIMAT0047330
Description	Cavia porcellus cpo-miR-509e-3p mature miRNA
Sequence	36 - UGAUUGCAGCAUCUGAGGGAGA - 57
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344