miRBase entry: cpo-mir-509d

Stem-loop cpo-mir-509d

Accession

MI0038813

Description

Cavia porcellus cpo-mir-509d precursor miRNA

Sequence

UCCUUCAGAAAGAUGCAAUCAUUuauguuugaauaUGAUUGCAUCCUCUGAGGGAGA
(((((((((..(((((((((((............))))))))))).)))))))))..

Structure

--         AA           Uuaug 
  UCCUUCAGA  GAUGCAAUCAU     u
  |||||||||  |||||||||||      
  AGGGAGUCU  CUACGUUAGUa     u
AG         -C           uaagu

Annotation confidence Not enough data

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Genome context

DS562939.1: 2715444-2715500 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cpo-mir-509d

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpo-miR-509d-5p

Accession	MIMAT0047327
Description	Cavia porcellus cpo-miR-509d-5p mature miRNA
Sequence	1 - UCCUUCAGAAAGAUGCAAUCAUU - 23
Evidence	experimental Illumina [1]

Mature cpo-miR-509d-3p

Accession	MIMAT0047328
Description	Cavia porcellus cpo-miR-509d-3p mature miRNA
Sequence	36 - UGAUUGCAUCCUCUGAGGGAGA - 57
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344