miRBase entry: cpo-mir-509a

Stem-loop cpo-mir-509a

Accession

MI0038810

Description

Cavia porcellus cpo-mir-509a precursor miRNA

Sequence

UUCUUCAGAGAGUUUUAGUCGUUuguaauuaaguaUGACUGAAGCAUCUGAGGGAGA
(((((((((..(((((((((((............))))))))))).)))))))))..

Structure

--         GA           Uugua 
  UUCUUCAGA  GUUUUAGUCGU     a
  |||||||||  |||||||||||      
  AGGGAGUCU  CGAAGUCAGUa     u
AG         -A           ugaau

Annotation confidence Not enough data

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Genome context

DS562939.1: 2739521-2739577 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cpo-mir-509a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpo-miR-509a-5p

Accession	MIMAT0047321
Description	Cavia porcellus cpo-miR-509a-5p mature miRNA
Sequence	1 - UUCUUCAGAGAGUUUUAGUCGUU - 23
Evidence	experimental Illumina [1]

Mature cpo-miR-509a-3p

Accession	MIMAT0047322
Description	Cavia porcellus cpo-miR-509a-3p mature miRNA
Sequence	36 - UGACUGAAGCAUCUGAGGGAGA - 57
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344