miRBase entry: cpo-mir-506

Stem-loop cpo-mir-506

Accession

MI0038806

Description

Cavia porcellus cpo-mir-506 precursor miRNA

Sequence

UACUUGGAAAGGUGCCAUUCAauaaauuacauuaugAAGUGCGCCUUCCUGAGUAGA
(((((((.(((((((..((((.(((......)))))))..))))))).)))))))..

Structure

--       A       CA    a   au 
  UACUUGG AAGGUGC  UUCA uaa  u
  ||||||| |||||||  |||| |||   
  AUGAGUC UUCCGCG  AAgu auu  a
AG       C       UG    -   ac

Annotation confidence Not enough data

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Genome context

DS562939.1: 2699627-2699683 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cpo-mir-506

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpo-miR-506-5p

Accession	MIMAT0047313
Description	Cavia porcellus cpo-miR-506-5p mature miRNA
Sequence	1 - UACUUGGAAAGGUGCCAUUCA - 21
Evidence	experimental Illumina [1]

Mature cpo-miR-506-3p

Accession	MIMAT0047314
Description	Cavia porcellus cpo-miR-506-3p mature miRNA
Sequence	37 - AAGUGCGCCUUCCUGAGUAGA - 57
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344