miRBase entry: cpo-mir-487b

Stem-loop cpo-mir-487b


Accession
MI0038790
Description
Cavia porcellus cpo-mir-487b precursor miRNA


Sequence

GUGGUUAUCCCUGUCCUGUUCGuuucacucacgucgAAUCGUACAGGGUCAUCCACUU
((((....((((((.(.(((((............))))).).))))))....))))..

Structure
--    UUAU      C U     uuuca 
  GUGG    CCCUGU C GUUCG     c
  ||||    |||||| | |||||      
  CACC    GGGACA G UAAgc     u
UU    UACU      U C     ugcac 


Annotation confidence Not enough data
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Genome context
DS562966.1: 1099737-1099794 [+]
Clustered miRNAs
17 other miRNAs are < 10 kb from cpo-mir-487b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpo-miR-487b-5p

Accession MIMAT0047281
Description Cavia porcellus cpo-miR-487b-5p mature miRNA
Sequence 1 - GUGGUUAUCCCUGUCCUGUUCG - 22
Evidence experimental
Illumina [1]

Mature cpo-miR-487b-3p

Accession MIMAT0047282
Description Cavia porcellus cpo-miR-487b-3p mature miRNA
Sequence 37 - AAUCGUACAGGGUCAUCCACUU - 58
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344