miRBase entry: cpo-mir-380

Stem-loop cpo-mir-380

Accession

MI0038760

Description

Cavia porcellus cpo-mir-380 precursor miRNA

Sequence

AUGGUUGACCAUAGAACAUGCGcuggcucagugucgUAUGUAAUAUGGUCCACGUCU
...((.(((((((..((((((((((...)))...)))))))..))))))).))....

Structure

-AUG  U       GA       ---   g 
    GU GACCAUA  ACAUGCG   cug  
    || |||||||  |||||||   ||| c
    CA CUGGUAU  UGUAUgc   gac  
UCUG  C       AA       ugu   u

Annotation confidence Not enough data

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Genome context

DS562966.1: 1084914-1084970 [+]

Clustered miRNAs

11 other miRNAs are < 10 kb from cpo-mir-380

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpo-miR-380-5p

Accession	MIMAT0047223
Description	Cavia porcellus cpo-miR-380-5p mature miRNA
Sequence	1 - AUGGUUGACCAUAGAACAUGCG - 22
Evidence	experimental Illumina [1]

Mature cpo-miR-380-3p

Accession	MIMAT0047224
Description	Cavia porcellus cpo-miR-380-3p mature miRNA
Sequence	37 - UAUGUAAUAUGGUCCACGUCU - 57
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344